results:

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Reference RE22 trimmed on ATCC

and vice versa

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Blasting separate consensus

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Vt sequence reference - single gene

RE22

ATCC

Alignment and Assembly of these two sequences failed.

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ID SNPs in RE22 assembly on Vt "genome'

Pic of contig-

SNP detection

did both RE22 and ATCC

results: very nice!

contains gene / AA info 

files: (CSV format)

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Overview of file/folder structure